Tutorial:Members Only

Manuals for Group Members

Scientific Articles
Journal Repository

ParaDiS
ParaDiS Cylinder Code Manuals
ParaDiS ThinFilm Code Manuals
ParaDiS Aniso Code Manuals
Cross-slip in ParaDiS
Parallel Cluster Guides

MD++
Foward Flux Sampling in MD++
Torsion and Bending PBC in MD++
A Polygonal Dislocation Loop in MD++
Use of Ewald Summation in MD++
MEAM Potential for Au-Si
MEAM Potential for Au-Ge
MEAM Potential for Si-Ge
Shuffle-Glide dislocation MD and NEB
Computing Binary Phase Diagram in MD++
Classical Simulation of GeAu droplet on Ge substrate

LAMMPS
Use Au-Si MEAM Potential in LAMMPS
Compile LAMMPS on GPU on Sherlock
Perform Nanoindentation on Al-Mg Alloy

Phase Field
Summary of Nanowire Growth Mechanism
Single Phase Field Model with Isotropic Surface Energy
Single Phase Field Model with Anisotropic Surface Energy
Multi Phase Field Model with Isotropic Interface Energy
Multi Phase Field Model with Anisotropic Interface Energy
Multi Phase Field Model (Revised Formulation)
Parallelization of the Phase Field Model
Phase Field Model for Grain Evolution

FEM Codes
How to install deal.II
How to install Moose

VASP
VASP Computing Bulk Modulus of Au
VASP Computing Bulk Modulus of ZrO2
VASP Computing Bulk Modulus of YSZ
VASP Computing Density of States of YSZ
VASP Computing Generalized Stacking Fault Energy of Au
VASP Computing Ideal Shear Strength of Au
VASP terminology

Qbox
Qbox Computing Bulk Modulus of Au
Qbox Computing Bulk Modulus of ZrO2
Qbox Implemention of Magnetic Field
Qbox Generating Pseudopotentials
MPBC/Qbox draft1
MPBC/Qbox draft2

C++
BOOST Library
Install GCC

LaTeX
Install LaTeX from Scratch
Beamer Presentations
TikZ package
PGFPLOTS
Asymptote

Tools
Atom Eye
Gnuplot
Computational XRD

Computers
Micro Maintenance
Libraries in SU-AHPCRC

Fatigue Literature Review
2D Dislocation Dynamics
3D Dislocation Dynamics

Outreach
Simulating Solids in MD++
Videos of bucky balls in motion