, including all inherited members.
| _ATOMCHARGE | MDFrame | |
| _ATOMMASS | MDFrame | |
| _ATOMTCPL | MDFrame | |
| _BENDMOMENT | MDFrame | |
| _BENDMOMENT_IND | MDFrame | |
| _BENDSIM | MDFrame | |
| _BOXDAMP | MDFrame | |
| _BOXTCPL | MDFrame | |
| _CHAINLENGTH | MDFrame | |
| _COM | MDFrame | |
| _constrainedMD | MDFrame | |
| _current_NIC | MDFrame | |
| _current_NNM | MDFrame | |
| _Dexx | MDFrame | |
| _DOUBLET | MDFrame | |
| _DVIRIAL_Dexx | MDFrame | |
| _ECOH | MDFrame | |
| _ECSPRING | MDFrame | |
| _ENABLE_FEXT | MDFrame | |
| _ENABLE_SWITCH | MDFrame | |
| _EPOT | MDFrame | |
| _EPOT0 | MDFrame | |
| _EPOT0_ext | MDFrame | |
| _EPOT_BOX | MDFrame | |
| _EPOT_Ewald | MDFrame | |
| _EPOT_Ewald_Real | MDFrame | |
| _EPOT_Ewald_Rec | MDFrame | |
| _EPOT_Ewald_Self | MDFrame | |
| _EPOT_IND | MDFrame | |
| _EPOT_IND_Ewald | MDFrame | |
| _EPOT_IND_Ewald_Real | MDFrame | |
| _EPOT_IND_Ewald_Rec | MDFrame | |
| _EPOT_RMV | MDFrame | |
| _ESTRAIN | MDFrame | |
| _EXTPRESSADD | MDFrame | |
| _EXTSTRESS | MDFrame | |
| _EXTSTRESSMUL | MDFrame | |
| _F | MDFrame | |
| _F0 | MDFrame | |
| _F_COM | MDFrame | |
| _F_Ewald | MDFrame | |
| _F_Ewald_Real | MDFrame | |
| _F_Ewald_Rec | MDFrame | |
| _Fc | MDFrame | |
| _Fext | MDFrame | |
| _GAUSS_EPSILON | MDFrame | |
| _GAUSS_RC | MDFrame | |
| _GAUSS_SIGMA | MDFrame | |
| _GH | MDFrame | |
| _H0 | MDFrame | |
| _HELM | MDFrame | |
| _HELMP | MDFrame | |
| _HPRECOND | MDFrame | |
| _I12_EPSILON | MDFrame | |
| _I12_RC | MDFrame | |
| _I12_SIGMA | MDFrame | |
| _KATOM | MDFrame | |
| _KBOX | MDFrame | |
| _Lam_array | MDFrame | |
| _Lam_check | MDFrame | |
| _LAMBDA | MDFrame | |
| _LAMBDA0 | MDFrame | |
| _LAMBDA1 | MDFrame | |
| _nebinterp | MDFrame | |
| _NIC | MDFrame | |
| _NIMAGES | MDFrame | |
| _NNM | MDFrame | |
| _NNM_plot | MDFrame | |
| _NP | MDFrame | |
| _NP0 | MDFrame | |
| _NPfixed | MDFrame | |
| _NPfree | MDFrame | |
| _OMEGA | MDFrame | |
| _P_COM | MDFrame | |
| _PSTRESS | MDFrame | |
| _PTHETA_COM | MDFrame | |
| _QL | MDFrame | |
| _QLM | MDFrame | |
| _R | MDFrame | |
| _R0 | MDFrame | |
| _RANDSEED | MDFrame | |
| _Rc | MDFrame | |
| _REFPOTENTIAL | MDFrame | |
| _RLIST | MDFrame | |
| _SAVEMEMORY | MDFrame | |
| _SHEARRATE | MDFrame | |
| _SIGMA | MDFrame | |
| _SKIN | MDFrame | |
| _SR | MDFrame | |
| _SR1 | MDFrame | |
| _SR2 | MDFrame | |
| _SR3 | MDFrame | |
| _SRA | MDFrame | |
| _SWITCHFREQ | MDFrame | |
| _SWITCHFUNC | MDFrame | |
| _T | MDFrame | |
| _TDES | MDFrame | |
| _TIMESTEP | MDFrame | |
| _TOPOL | MDFrame | |
| _TORQUE | MDFrame | |
| _TORQUE_IND | MDFrame | |
| _TORSIONSIM | MDFrame | |
| _TOTPRESSURE | MDFrame | |
| _TOTSTRESS | MDFrame | |
| _TOTSTRESSinMPa | MDFrame | |
| _UR | MDFrame | |
| _VACUUMRATIO | MDFrame | |
| _VH | MDFrame | |
| _VIRIAL_Ewald | MDFrame | |
| _VIRIAL_Ewald_Real | MDFrame | |
| _VIRIAL_Ewald_Rec | MDFrame | |
| _VIRIAL_IND | MDFrame | |
| _VR | MDFrame | |
| _VSR | MDFrame | |
| _WALLMASS | MDFrame | |
| _WAVG | MDFrame | |
| _WTOT | MDFrame | |
| _XPRECOND | MDFrame | |
| _YPRECOND | MDFrame | |
| _ZPRECOND | MDFrame | |
| abortparser() | SCParser | |
| addbend() | MDFrame | |
| addFext_to_group() | MDFrame | |
| addtorque() | MDFrame | |
| algorithm_id | MDFrame | |
| Alloc() | MDFrame | [virtual] |
| AllocChain() | MDFrame | |
| alloccolors() | MDFrame | |
| alloccolorsX() | MDFrame | |
| allocmultiple | MDFrame | |
| allocQLM() | MDFrame | |
| annealpath() | MDFrame | |
| annealspec | MDFrame | |
| applyconstraint() | MDFrame | |
| applyshear | MDFrame | |
| applystrain() | MDFrame | |
| assign_Lam() | MDFrame | |
| assignvar(int offset=0) | Organizer | [virtual] |
| atomcolor | MDFrame | |
| atomeye() | MDFrame | |
| atomeyeexe | MDFrame | |
| atomeyepath | MDFrame | |
| atomeyerepeat | MDFrame | |
| atomradius | MDFrame | |
| autowritegiffreq | MDFrame | |
| avgcn | MDFrame | |
| backgroundcolor | MDFrame | |
| bendspec | MDFrame | |
| bindvar(char *vn, void *p, int type) | Organizer | [inline] |
| Bond(int I, int J) const | MDFrame | |
| bondcolor | MDFrame | |
| bondlength | MDFrame | |
| bondradius | MDFrame | |
| buffer | SCParser | |
| bufferbeginswith(char c) | SCParser | |
| buffercontains(char c) | SCParser | |
| bufferendswith(char c) | SCParser | |
| bufferis(char *s) | SCParser | |
| calcentralsymmetry() | MDFrame | |
| calcoutput() | MDFrame | [virtual] |
| calcprop() | MDFrame | [virtual] |
| calcrystalorder() | MDFrame | |
| caldisregistry() | MDFrame | |
| caldscom12() | MDFrame | |
| calDVIRIALDexx() | MDFrame | |
| calgh() | VaspBox | |
| calHessian() | MDFrame | |
| call_potential() | MDFrame | [virtual] |
| calloopdisp(Vector3 *, double, double, Vector3 *, Vector3 *, Vector3 *) | MDFrame | |
| calmisfit() | MDFrame | |
| calmisfit2() | MDFrame | |
| calModeHessian() | MDFrame | |
| calphonondisp() | MDFrame | |
| cchar | SCParser | |
| CE() | MDFrame | |
| CE_clear() | MDFrame | |
| CE_enumKV() | MDFrame | |
| CE_eREAL | MDFrame | |
| CE_eREC | MDFrame | |
| CE_fillSinCosTables() | MDFrame | |
| CE_init() | MDFrame | |
| CE_iREAL | MDFrame | |
| CE_iREC | MDFrame | |
| CE_Kc | MDFrame | |
| CE_KV | MDFrame | |
| CE_Mka | MDFrame | |
| CE_Mkb | MDFrame | |
| CE_Mkc | MDFrame | |
| CE_MKV | MDFrame | |
| CE_nKV | MDFrame | |
| CE_Real() | MDFrame | |
| CE_Rec() | MDFrame | |
| CE_sc_axby | MDFrame | |
| CE_sckk | MDFrame | |
| CE_scx | MDFrame | |
| CE_scy | MDFrame | |
| CE_scz | MDFrame | |
| CE_sREAL | MDFrame | |
| CE_sREC | MDFrame | |
| CE_tREAL | MDFrame | |
| CE_tREC | MDFrame | |
| cell_mem | MDFrame | |
| celllist | MDFrame | |
| clearFext() | MDFrame | |
| clearR0() | MDFrame | |
| closepropfile() | MDFrame | |
| closewindow() | MDFrame | |
| color_ind | MDFrame | |
| coloratoms | MDFrame | |
| colornames | MDFrame | |
| colors | MDFrame | |
| command | MDFrame | |
| conj_dfpred | MDFrame | |
| conj_f | MDFrame | |
| conj_fevalmax | MDFrame | |
| conj_fixatoms | MDFrame | |
| conj_fixbox | MDFrame | |
| conj_fixboxvec | MDFrame | |
| conj_fixdir | MDFrame | |
| conj_fixshape | MDFrame | |
| conj_ftol | MDFrame | |
| conj_g2res | MDFrame | |
| conj_ier | MDFrame | |
| conj_itmax | MDFrame | |
| conj_space | MDFrame | |
| conj_step | MDFrame | |
| constrain_dist | MDFrame | |
| constrain_fixedatoms() | MDFrame | |
| constrainatoms | MDFrame | |
| constrainedrelax() | MDFrame | |
| constrainF | MDFrame | |
| constrainS | MDFrame | |
| constrainS_inst | MDFrame | |
| continue_curstep | MDFrame | |
| convertCNtoCFG() | MDFrame | |
| convertXDATCAR() | MDFrame | |
| copybendatoms() | MDFrame | |
| copyCNtoRchain(int j) | MDFrame | |
| copyRchaintoCN(int j) | MDFrame | |
| copytoconfig1(int) | MDFrame | |
| copytoconfig2(int) | MDFrame | |
| copytorqueatoms() | MDFrame | |
| crystalstructure | MDFrame | |
| cstr_potential_wrapper(int *n, double x[], double *f, double df[]) | MDFrame | [static] |
| cstr_potential_wrapper_c(int n, double x[], double *f, double df[]) | MDFrame | [static] |
| curn | SCParser | |
| curstep | MDFrame | |
| cutpastecn() | MDFrame | |
| cutpath() | MDFrame | |
| cutslice() | MDFrame | |
| dEdlambda | MDFrame | |
| DFS(int, int, double) | MDFrame | |
| DFS1(int, int, double, double) | MDFrame | |
| dH | MDFrame | |
| dirname | Organizer | |
| diropened | Organizer | |
| dlambdadt | MDFrame | |
| dscom12 | MDFrame | |
| dstrain | VaspBox | |
| dstress | VaspBox | |
| dumpbuffer() | SCParser | |
| ECpotential() | MDFrame | |
| ECpotential_energyonly() | MDFrame | |
| ECpotential_energyonly(int iatom) | MDFrame | |
| element | MDFrame | |
| ensemble_type | MDFrame | |
| equilsteps | MDFrame | |
| eval() | MDFrame | |
| eval_insertparticle() | MDFrame | |
| eval_removeparticle() | MDFrame | |
| Ewald_Alpha | MDFrame | |
| Ewald_CE_or_PME | MDFrame | |
| Ewald_cell_V | MDFrame | |
| Ewald_H_L1 | MDFrame | |
| Ewald_H_L2 | MDFrame | |
| Ewald_H_L3 | MDFrame | |
| Ewald_init() | MDFrame | |
| Ewald_option_Alpha | MDFrame | |
| Ewald_precision | MDFrame | |
| Ewald_qSQRsum | MDFrame | |
| Ewald_Rcut | MDFrame | |
| Ewald_time_ratio | MDFrame | |
| exec(char *name) | VaspBox | [virtual] |
| extendbox() | MDFrame | |
| extforce | MDFrame | |
| FFS0_check | MDFrame | |
| FFS_i | MDFrame | |
| FFS_i_minus | MDFrame | |
| FFS_i_plus | MDFrame | |
| FFS_Pp | MDFrame | |
| FFScn_weight | MDFrame | |
| FFScnfile | MDFrame | |
| FFSfilecounter | MDFrame | |
| FFSoption | MDFrame | |
| FFSprocess() | MDFrame | |
| FFSpruning | MDFrame | |
| filecounter | MDFrame | |
| finalcn | MDFrame | |
| finalcnfile | MDFrame | |
| finallammps | MDFrame | |
| finalmdcaskcon | MDFrame | |
| finalmdcaskinput | MDFrame | |
| finalposcar | MDFrame | |
| findcenterofmass(class Vector3 *) | MDFrame | |
| findcore() | MDFrame | |
| firsttime | MDFrame | |
| fix_constrainedatoms() | MDFrame | |
| fixallatoms() | MDFrame | |
| fixatomcolor | MDFrame | |
| fixatoms_by_group(double *) | MDFrame | |
| fixatoms_by_ID() | MDFrame | |
| fixatoms_by_pos_topol() | MDFrame | |
| fixatoms_by_position() | MDFrame | |
| fixatoms_by_species(double *) | MDFrame | |
| fixed | MDFrame | |
| fixedatomenergypartition | MDFrame | |
| forcemul | MDFrame | |
| fortranexe | MDFrame | |
| fortranpath | MDFrame | |
| fortranrelax() | MDFrame | |
| freeallatoms() | MDFrame | |
| GAUSSpotential() | MDFrame | |
| Gear6_init() | MDFrame | |
| getfilehandler(int argc, char *argv[]) | SCParser | [static] |
| gh | VaspBox | |
| GnuPlotHistogram() | MDFrame | |
| group | MDFrame | |
| h2real | MDFrame | |
| HApotential() | MDFrame | |
| HApotential_energyonly() | MDFrame | |
| hes | MDFrame | |
| hesind | MDFrame | |
| heslen | MDFrame | |
| highlightcolor | MDFrame | |
| I12potential() | MDFrame | |
| I12potential_energyonly() | MDFrame | |
| identify(const char *name) | SCParser | |
| image | MDFrame | |
| implementation_type | MDFrame | |
| incnfile | MDFrame | |
| initparser() | VaspBox | [virtual] |
| initRchain() | MDFrame | |
| initvars() | VaspBox | [inline, virtual] |
| initvelocity() | MDFrame | |
| input | MDFrame | |
| integrator() | MDFrame | [virtual] |
| integrator_type | MDFrame | |
| intercfgfile | MDFrame | |
| intercnfile | MDFrame | |
| interpCN(double s) | MDFrame | |
| L_for_QLM | MDFrame | |
| latticeconst | MDFrame | |
| latticesize | MDFrame | |
| link_head | MDFrame | |
| link_list | MDFrame | |
| logfilename | Organizer | |
| makebendhandle() | MDFrame | |
| makecrystal() | MDFrame | |
| makecut() | MDFrame | |
| makecylinder() | MDFrame | |
| makedipole() | MDFrame | |
| makedislcylinder() | MDFrame | |
| makedislocation() | MDFrame | |
| makedisloop() | MDFrame | |
| makegrainboundary() | MDFrame | |
| maketorquehandle() | MDFrame | |
| makewave() | MDFrame | |
| markremovefixedatoms() | MDFrame | |
| MC_accept | MDFrame | |
| MC_accept_ratio | MDFrame | |
| MC_accept_tot | MDFrame | |
| MC_atom | MDFrame | |
| MC_dfrac | MDFrame | |
| MC_dN_freq | MDFrame | |
| MC_dr | MDFrame | |
| MC_dV_freq | MDFrame | |
| MC_dVmax | MDFrame | |
| MC_fracatom | MDFrame | |
| MC_Lambda3 | MDFrame | |
| MC_mu_ext | MDFrame | |
| MC_P_ext | MDFrame | |
| MC_switchoffatoms | MDFrame | |
| MCperturbevelocity() | MDFrame | |
| MCstep() | MDFrame | |
| MCstep_dN() | MDFrame | |
| MCstep_dN_fracatom() | MDFrame | |
| MCstep_dV() | MDFrame | |
| MCstep_dV_fracatom() | MDFrame | |
| MCstep_fracatom() | MDFrame | |
| MCstep_moveatom() | MDFrame | |
| MCstep_moveatom_fracatom() | MDFrame | |
| MCSWITCHstep(double lambda) | MDFrame | |
| MDCASKpot | MDFrame | |
| MDFrame() | MDFrame | [inline] |
| moveatom() | MDFrame | |
| movebox() | VaspBox | |
| movefixedatoms() | MDFrame | |
| movegroup() | MDFrame | |
| moveRchain(int, int) | MDFrame | |
| multieval() | MDFrame | |
| multiplyvelocity() | MDFrame | |
| myname | MDFrame | |
| N_cluster_temp | MDFrame | |
| N_lgst_cluster | MDFrame | |
| N_lgst_index | MDFrame | |
| N_lgst_skin | MDFrame | |
| N_lgst_skin_index | MDFrame | |
| N_skin_P | MDFrame | |
| N_solid_P | MDFrame | |
| NbrList_free() | MDFrame | |
| NbrList_freecell() | MDFrame | |
| NbrList_freelinklist() | MDFrame | |
| NbrList_init(int, int) | MDFrame | |
| NbrList_initcell(int, int, int, int) | MDFrame | |
| NbrList_initlinklist(int) | MDFrame | |
| NbrList_needrefresh() | MDFrame | |
| NbrList_print() | MDFrame | |
| NbrList_reconstruct(int iatom=-1) | MDFrame | [virtual] |
| NbrList_reconstruct_use_cell_list(int iatom=-1) | MDFrame | |
| NbrList_reconstruct_use_link_list(int iatom=-1) | MDFrame | |
| NbrList_refresh() | MDFrame | |
| NbrListPlot_init(int, int) | MDFrame | |
| NbrListPlot_reconstruct() | MDFrame | |
| ncom | MDFrame | |
| ncpu | SCParser | |
| NCS | MDFrame | |
| nebrelax() | MDFrame | |
| nebspec | MDFrame | |
| NHChainLen | MDFrame | |
| NHMass | MDFrame | |
| nindex | MDFrame | |
| nindex_mem | MDFrame | |
| nindex_plot | MDFrame | |
| nindex_plot_mem | MDFrame | |
| nn | MDFrame | |
| nn_plot | MDFrame | |
| nolog | Organizer | |
| NPH_Gear6() | MDFrame | |
| NPH_VVerlet(int) | MDFrame | |
| NPH_VVerlet_Explicit_1(int) | MDFrame | |
| npold | MDFrame | |
| NPT_Gear6() | MDFrame | |
| NPT_VVerlet_Explicit_1(int) | MDFrame | |
| NPT_VVerlet_Explicit_2(int) | MDFrame | |
| NPT_VVerlet_Implicit(int) | MDFrame | |
| NPTC_Gear6() | MDFrame | |
| nspecies | MDFrame | |
| NVE_Gear6() | MDFrame | |
| NVE_VVerlet(int) | MDFrame | |
| NVT_Gear6() | MDFrame | |
| NVT_VVerlet_Explicit_1(int) | MDFrame | |
| NVT_VVerlet_Explicit_2(int) | MDFrame | |
| NVT_VVerlet_Implicit(int) | MDFrame | |
| NVTC_Gear6() | MDFrame | |
| NVTC_VVerlet_Explicit(int) | MDFrame | |
| olog | Organizer | |
| openFFScnfile() | MDFrame | |
| openintercnfile() | MDFrame | |
| openpropfile() | MDFrame | |
| openwin() | MDFrame | [virtual] |
| openwindow(int w, int h, const char *n) | MDFrame | |
| Organizer() | Organizer | [inline] |
| outcarfile | VaspBox | |
| outpropfile | MDFrame | |
| output_dat | MDFrame | |
| output_fmt | MDFrame | |
| output_str | MDFrame | |
| overwrite | Organizer | |
| parse(FILE *file) | Organizer | |
| parse_buffer(FILE *file) | SCParser | |
| parse_line(FILE *file) | Organizer | |
| pbcshiftatom() | MDFrame | |
| perturbevelocity() | MDFrame | |
| pf | MDFrame | |
| plot() | MDFrame | [virtual] |
| plot_atom_info | MDFrame | |
| plot_color_axis | MDFrame | |
| plot_color_bar | MDFrame | |
| plot_color_windows | MDFrame | |
| plot_highlight_atoms | MDFrame | |
| plot_limits | MDFrame | |
| plot_map_pbc | MDFrame | |
| plotfreq | MDFrame | |
| PME() | MDFrame | |
| PME_B | MDFrame | |
| PME_BC | MDFrame | |
| PME_bsp_fac | MDFrame | |
| PME_bsp_Mk | MDFrame | |
| PME_bsp_n | MDFrame | |
| PME_C | MDFrame | |
| PME_cal_bsp_Bm(int mi, int Ki) | MDFrame | |
| PME_cal_bsp_Cm(int m1, int m2, int m3) | MDFrame | |
| PME_cal_bsp_fac() | MDFrame | |
| PME_cal_bsp_Mk() | MDFrame | |
| PME_cal_bsp_Mu(int n, double u) | MDFrame | |
| PME_clear() | MDFrame | |
| PME_CONV | MDFrame | |
| PME_d1MU1 | MDFrame | |
| PME_d1MU2 | MDFrame | |
| PME_d1MU3 | MDFrame | |
| PME_d2MU1 | MDFrame | |
| PME_d2MU2 | MDFrame | |
| PME_d2MU3 | MDFrame | |
| PME_eREC | MDFrame | |
| PME_fft_plan1 | MDFrame | |
| PME_fft_plan2 | MDFrame | |
| PME_init() | MDFrame | |
| PME_IQ | MDFrame | |
| PME_iREC | MDFrame | |
| PME_K1 | MDFrame | |
| PME_K123 | MDFrame | |
| PME_K123d | MDFrame | |
| PME_K123S | MDFrame | |
| PME_K1d | MDFrame | |
| PME_K2 | MDFrame | |
| PME_K23 | MDFrame | |
| PME_K23S | MDFrame | |
| PME_K2d | MDFrame | |
| PME_K3 | MDFrame | |
| PME_K3d | MDFrame | |
| PME_K3S | MDFrame | |
| PME_m1 | MDFrame | |
| PME_m1mod | MDFrame | |
| PME_m1s | MDFrame | |
| PME_m2 | MDFrame | |
| PME_m2mod | MDFrame | |
| PME_m2s | MDFrame | |
| PME_m3 | MDFrame | |
| PME_m3mod | MDFrame | |
| PME_m3s | MDFrame | |
| PME_MU1 | MDFrame | |
| PME_MU2 | MDFrame | |
| PME_MU3 | MDFrame | |
| PME_Q | MDFrame | |
| PME_R_bsp_Bm | MDFrame | |
| PME_Rec() | MDFrame | |
| PME_sREC | MDFrame | |
| PME_tREC | MDFrame | |
| PME_x1 | MDFrame | |
| PME_x2 | MDFrame | |
| PME_x3 | MDFrame | |
| potential() | VaspBox | [inline, virtual] |
| potential_energyonly() | MDFrame | [virtual] |
| potential_energyonly(int iatom) | MDFrame | [virtual] |
| potential_wrapper(int *n, double x[], double *f, double df[]) | MDFrame | [static] |
| potential_wrapper_c(int n, double x[], double *f, double df[]) | MDFrame | [static] |
| potfile | MDFrame | |
| Principal_Inertia | MDFrame | |
| printatoms_in_sphere() | MDFrame | |
| printfreq | MDFrame | |
| printResult() | MDFrame | |
| QLM_cutoff | MDFrame | |
| QLM_mark | MDFrame | |
| QLM_solid | MDFrame | |
| quit() | Organizer | |
| R0toR() | MDFrame | |
| randomposition() | MDFrame | |
| Rc_for_QLM | MDFrame | |
| rc_plot | MDFrame | |
| readcn() | MDFrame | |
| readHessian() | MDFrame | |
| readLAMMPS() | MDFrame | |
| readMDCASK() | MDFrame | |
| readMDCASKJAIME() | MDFrame | |
| readnextstring(FILE *file) | SCParser | |
| readoutcarstress() | VaspBox | |
| readparallelnebcn | MDFrame | |
| readPOSCAR() | MDFrame | |
| readRASMOLXYZ(char *fname) | MDFrame | |
| readRchain() | MDFrame | |
| readXYZ() | MDFrame | |
| redefinepbc() | MDFrame | |
| relabelatom() | MDFrame | |
| relax() | MDFrame | |
| relax_by_group(double *) | MDFrame | |
| removeellipsoid() | MDFrame | |
| removefixedatoms() | MDFrame | |
| removeoverlapatoms() | MDFrame | |
| removerectbox() | MDFrame | |
| removetorquehandle() | MDFrame | |
| renew | Organizer | |
| replacefreeatom() | MDFrame | |
| restoreH() | MDFrame | |
| reversefixedatoms() | MDFrame | |
| reversespecies() | MDFrame | |
| RHtoS() | MDFrame | |
| rotate() | MDFrame | |
| rotate_com() | MDFrame | |
| rotateangles | MDFrame | |
| RtoR0() | MDFrame | |
| run() | MDFrame | [virtual] |
| runavgposition | MDFrame | |
| runcommand() | MDFrame | |
| runMC() | MDFrame | |
| runMCSWITCH() | MDFrame | |
| runMDSWITCH() | MDFrame | |
| runTAMC() | MDFrame | |
| s2 | MDFrame | |
| s2real | MDFrame | |
| s3 | MDFrame | |
| s4 | MDFrame | |
| s5 | MDFrame | |
| savecfg | MDFrame | |
| savecfgcount | MDFrame | |
| savecfgfreq | MDFrame | |
| savecn | MDFrame | |
| savecnfreq | MDFrame | |
| saveFFScn | MDFrame | |
| saveH() | MDFrame | |
| saveintercn(int) | MDFrame | [virtual] |
| saveprop | MDFrame | |
| savepropfreq | MDFrame | |
| saverot() | MDFrame | |
| scalebox() | VaspBox | |
| scaleH() | MDFrame | |
| scaleVel() | MDFrame | |
| Scompliance | VaspBox | |
| SCParser() | SCParser | [inline] |
| searchstringfromfile(char *inLine, const char *match, int len, FILE *fp) | VaspBox | |
| setconfig1() | MDFrame | |
| setconfig2() | MDFrame | |
| setFFSfilecounter() | MDFrame | |
| setfilecounter() | MDFrame | |
| setfixbufferatoms() | MDFrame | |
| setfixedatomsgroup() | MDFrame | |
| setfixedatomsspecies() | MDFrame | |
| setgroupcomvel() | MDFrame | |
| setH() | MDFrame | |
| shift | SCParser | |
| shiftbox() | MDFrame | |
| shmsize | SCParser | |
| SHtoR() | MDFrame | |
| sleepseconds | Organizer | |
| species | MDFrame | |
| splicecn() | MDFrame | |
| statedistance() | MDFrame | |
| step() | MDFrame | |
| step0 | MDFrame | |
| storedr | MDFrame | |
| strelax() | MDFrame | |
| SWITCH_Find_Lambda() | MDFrame | |
| switchconfig() | MDFrame | |
| SWITCHpotential(double lambda) | MDFrame | |
| SWITCHpotential_energyonly(double lambda) | MDFrame | |
| SWITCHpotential_user(double lambda) | MDFrame | [virtual] |
| SWITCHpotential_user_energyonly(double lambda) | MDFrame | [virtual] |
| testpotential() | MDFrame | |
| torquespec | MDFrame | |
| totalsteps | MDFrame | |
| translate_com() | MDFrame | |
| varn | SCParser | |
| varname | SCParser | |
| varptr | SCParser | |
| vartype | SCParser | |
| VaspBox() | VaspBox | [inline] |
| vaspboxstepsize | VaspBox | |
| vaspstress | VaspBox | |
| vt2 | MDFrame | |
| VVerlet_Get_h2() | MDFrame | |
| VVerlet_Get_s2() | MDFrame | |
| VVerlet_Get_Tinst() | MDFrame | |
| VVerlet_NHCINT() | MDFrame | |
| willabort | SCParser | |
| win | MDFrame | |
| win_height | MDFrame | |
| win_width | MDFrame | |
| winplot() | MDFrame | [virtual] |
| winplot(int) | MDFrame | [virtual] |
| wintogglepause() | MDFrame | |
| writeall | MDFrame | |
| writeatomeyecfgfile(char *fname) | MDFrame | [virtual] |
| writeatomtv(char *fname) | MDFrame | |
| writeavgcnfile(int zip=1, bool bg=true) | MDFrame | |
| writeENERGY(char *fname) | MDFrame | |
| writeFFScnfile(int zip=1, bool bg=false) | MDFrame | |
| writefinalcnfile(int zip=1, bool bg=true) | MDFrame | |
| writeFORCE(char *fname) | MDFrame | |
| writefortraninifile(char *fname) | MDFrame | |
| writeintercnfile(int zip=1, bool bg=false) | MDFrame | |
| writeLAMMPS() | MDFrame | |
| writeMDCASK() | MDFrame | |
| writeMDCASKXYZ(char *fname) | MDFrame | |
| writePINYMD(char *fname) | MDFrame | |
| writePOSCAR() | MDFrame | |
| writePOSITION(char *fname) | MDFrame | |
| writepovray(char *fname) | MDFrame | |
| writeRASMOLXYZ(char *fname) | MDFrame | |
| writeRchain() | MDFrame | |
| writevelocity | MDFrame | |
| writeZXCGR() | VaspBox | |
| wSKIN | MDFrame | |
| zeta | MDFrame | |
| zeta2 | MDFrame | |
| zeta3 | MDFrame | |
| zeta4 | MDFrame | |
| zeta5 | MDFrame | |
| zetaa | MDFrame | |
| zetaNHC | MDFrame | |
| zetaNHC2 | MDFrame | |
| zetaNHC3 | MDFrame | |
| zetaNHC4 | MDFrame | |
| zetaNHC5 | MDFrame | |
| zetaNHCa | MDFrame | |
| zetaNHCv | MDFrame | |
| zetav | MDFrame | |
| zipfiles | MDFrame | |
| zxcgrfile | VaspBox | |
| ~MDFrame() | MDFrame | [inline, virtual] |
| ~Organizer() | Organizer | [inline, virtual] |
| ~SCParser() | SCParser | [inline, virtual] |
