How to install deal.II - Revision history

Yanmingw at 20:21, 30 May 2017

2017-05-30T20:21:55Z

← Older revision		Revision as of 20:21, 30 May 2017
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	[[File:grid-2.jpg\| grid-2.eps]]		[[File:grid-2.jpg\| grid-2.eps]]

			A comprehensive tutorial of Deal.II can be found on
	https://www.dealii.org/8.4.0/doxygen/deal.II/Tutorial.html		https://www.dealii.org/8.4.0/doxygen/deal.II/Tutorial.html .

	== Acknowledgement ==		== Acknowledgement ==

2017-05-30T20:18:41Z

Test

← Older revision		Revision as of 20:18, 30 May 2017
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	== Test ==		== Test ==
	To test if the package is successfully installed,		A simple example can be used to test if the package is successfully installed. Type the following commands to compile and run the example.

	cd /share/PI/caiwei/dealii/deal.II-v8.4.0/examples/step-1		cd /share/PI/caiwei/dealii/deal.II-v8.4.0/examples/step-1
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	make run		make run

	~~produces~~ ~~graphics~~ of two grids ~~(grid-1~~.eps ~~and grid-2.eps)~~. They look like ~~this:~~		Once the program is finished, it generates the figures of two grids in .eps format. They look like

	[[File:grid-1.jpg\|grid-1.eps]]		[[File:grid-1.jpg\| grid-1.eps]]
	[[File:grid-2.jpg\|grid-2.eps]]		[[File:grid-2.jpg\| grid-2.eps]]

			https://www.dealii.org/8.4.0/doxygen/deal.II/Tutorial.html

	== Acknowledgement ==		== Acknowledgement ==

2017-05-30T20:13:49Z

← Older revision		Revision as of 20:13, 30 May 2017
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	produces graphics of two grids (grid-1.eps and grid-2.eps). They look like this:		produces graphics of two grids (grid-1.eps and grid-2.eps). They look like this:

			[[File:grid-1.jpg\|grid-1.eps]]
			[[File:grid-2.jpg\|grid-2.eps]]

	== Acknowledgement ==		== Acknowledgement ==

2017-05-30T20:09:40Z

@@ Line 60: / Line 60: @@
     source /share/PI/caiwei/dealii/configuration/enable.sh
  Build finished in 6377 seconds.
 == Acknowledgement ==

2017-05-25T17:51:06Z

Installation

← Older revision		Revision as of 17:51, 25 May 2017
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	The program starts with a couple of checks, where you only need to press the '''Enter''' button to continue. Then, the [https://trilinos.org/ trilinos] library will be installed, which the Deal.II package depends on (Another choice is to use PETSc, but its installation is not demoed in this instruction).		The program starts with a couple of checks, where you only need to press the '''Enter''' button to continue. Then, the [https://trilinos.org/ trilinos] library will be installed, which the Deal.II package depends on (Another choice is to use PETSc, but its installation is not demoed in this instruction).

	If everything is installed successfully, at the end of the process, the following message will be popped up.		If everything is installed successfully, at the end of the process, the following message will be popped up, which also contains the commands to load the Deall.II libraries.

	dealii.git has now been installed in		dealii.git has now been installed in

2017-05-25T17:47:13Z

← Older revision		Revision as of 17:47, 25 May 2017
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	== Acknowledgement ==		== Acknowledgement ==
			We appreciate the great help from Xiaoxuan Zhang, who is a Ph.D. student in Prof. Christian Linder's group at Stanford University.

2017-05-25T17:43:43Z

← Older revision		Revision as of 17:43, 25 May 2017
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	source /share/PI/caiwei/dealii/configuration/enable.sh		source /share/PI/caiwei/dealii/configuration/enable.sh
	Build finished in 6377 seconds.		Build finished in 6377 seconds.

			== Acknowledgement ==

2017-05-25T17:42:48Z

Installation

← Older revision		Revision as of 17:42, 25 May 2017
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	./candi.sh --platform=deal.II-toolchain/platforms/supported/centos7.platform		./candi.sh --platform=deal.II-toolchain/platforms/supported/centos7.platform

	The program starts with a couple of checks, where only ~~requires you~~ to press the '''Enter''' button ~~several~~ ~~times~~. ~~trilinos~~ https://trilinos.org/		The program starts with a couple of checks, where you only need to press the '''Enter''' button to continue. Then, the [https://trilinos.org/ trilinos] library will be installed, which the Deal.II package depends on (Another choice is to use PETSc, but its installation is not demoed in this instruction).

			If everything is installed successfully, at the end of the process, the following message will be popped up.

			dealii.git has now been installed in
			/share/PI/caiwei/dealii/deal.II-v8.4.0
			To update your environment variables, use the created modulefile:
			/share/PI/caiwei/dealii/configuration/modulefiles/default
			If you are not using modules, execute the following command instead:
			source /share/PI/caiwei/dealii/configuration/deal.II-v8.4.0
			To export environment variables for all installed libraries execute:
			source /share/PI/caiwei/dealii/configuration/enable.sh
			Build finished in 6377 seconds.

2017-05-25T17:33:45Z

Installation

← Older revision		Revision as of 17:33, 25 May 2017
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	== Installation ==		== Installation ==
	The installation is straight forward. An ~~automated~~ ~~script~~ is ~~provided~~ to ~~guide~~ you ~~through~~ ~~the~~ ~~installation~~ ~~process~~.		The installation is straight forward, but it may take up to 3 hours. To make sure it is not killed by the scheduler, you may submit a device allocation request for a relatively long time.

			sdev -t 4:00:00 -p mc

			When you get the node, the following automated script can guide you through the installation process.
	cd /shared/PI/caiwei/candi		cd /shared/PI/caiwei/candi
	./candi.sh --platform=deal.II-toolchain/platforms/supported/centos7.platform		./candi.sh --platform=deal.II-toolchain/platforms/supported/centos7.platform

			The program starts with a couple of checks, where only requires you to press the '''Enter''' button several times. trilinos https://trilinos.org/

2017-05-25T17:22:12Z

← Older revision		Revision as of 17:22, 25 May 2017
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	This needs to be modified if you intend to install the package in other places.		This needs to be modified if you intend to install the package in other places.

	== ~~References~~ ==		== Installation ==
			The installation is straight forward. An automated script is provided to guide you through the installation process.

			cd /shared/PI/caiwei/candi
	The below webpages would be useful when you are new to using the clusters.
			./candi.sh --platform=deal.II-toolchain/platforms/supported/centos7.platform

	https://www.stanford.edu/group/hpcc/cgi-bin/mediawiki/index.php/Main_Page

	https://www.stanford.edu/group/hpcc/cgi-bin/mediawiki/index.php/I%27m_new_%26_don%27t_know_what_to_do

	https://www.stanford.edu/group/hpcc/cgi-bin/mediawiki/index.php/New_to_Cluster_Computing